SubtiBank SubtiBank
yyaQ [2018-05-30 17:47:15]
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yyaQ [2018-05-30 17:47:15]

unknown
locus
BSU40750
pI
5.82
mw
13.77 kDa
protein length
118 aa Sequence Blast
gene length
354 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    4,186,092 → 4,186,448

    The protein

    Structure

  • [PDB|2KFP] (from Pseudomonas syringae, 44% identity) [pubmed|22865330]

    • Expression and Regulation

    Operons

    genes
    [gene|9CDE4E596FF563B682E839F82B7CD96CE58FCA8D|yyaQ]
    description
    [pubmed|29794222]
    regulation
    the [SW|RNA switch] RNA is degraded by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] [pubmed|29794222]
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    Biological materials

    Mutant

  • MGNA-B857 (yyaQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1856 NBRP B. subtilis, Japan]
  • BKE40750 (Δ[gene|9CDE4E596FF563B682E839F82B7CD96CE58FCA8D|yyaQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTCAATCACTCCTTTA, downstream forward: _UP4_TGAAGATAAAGAGTGTTCCT
  • BKK40750 (Δ[gene|9CDE4E596FF563B682E839F82B7CD96CE58FCA8D|yyaQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTCAATCACTCCTTTA, downstream forward: _UP4_TGAAGATAAAGAGTGTTCCT

    • References

  • 20525796,22865330